string javaScript = "<script language="JavaScript"> alert('wwwoww'); </script>";
System.Web.UI.ScriptManager.RegisterStartupScript(this, this.GetType(), "JCall2", javaScript, false);
Or you can also do the same by
System.Web.UI.ScriptManager.RegisterStartupScript(this, this.GetType(), "JCall2", "alert('Hello')", Yes);