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Derivative-free nonlinear optimization for .NET and Java

, 18 Dec 2012 MIT
Announcing standalone implementations of derivative-free nonlinear optimizers for .NET and Java platforms
csbobyqa-master
.gitignore
.nuget
NuGet.targets
Cureos.Numerics
Properties
Fsharp.Bobyqa
Fsharp.Bobyqa.fsproj
Program.fs
README.rdoc
csbobyqa.Tests
Properties
packages
reference
NA2009_06.pdf
.gitignore
NuGet.exe
NuGet.targets
Fsharp.Bobyqa.fsproj
Program.fs
README.rdoc
NA2009_06.pdf
cscobyla-master
.gitignore
.nuget
NuGet.targets
Cscobyla.Tests
.gitignore
Properties
Tests
Cureos.Numerics
Properties
README.rdoc
.gitignore
NuGet.exe
NuGet.targets
.gitignore
README.rdoc
jcobyla-master
README.rdoc
nbproject
genfiles.properties
project.properties
src
com
cureos
numerics
test
com
cureos
numerics
<?xml version="1.0" encoding="UTF-8"?>
<!-- You may freely edit this file. See commented blocks below for -->
<!-- some examples of how to customize the build. -->
<!-- (If you delete it and reopen the project it will be recreated.) -->
<!-- By default, only the Clean and Build commands use this build script. -->
<!-- Commands such as Run, Debug, and Test only use this build script if -->
<!-- the Compile on Save feature is turned off for the project. -->
<!-- You can turn off the Compile on Save (or Deploy on Save) setting -->
<!-- in the project's Project Properties dialog box.-->
<project name="jcobyla" default="default" basedir=".">
    <description>Builds, tests, and runs the project jcobyla.</description>
    <import file="nbproject/build-impl.xml"/>
    <!--

    There exist several targets which are by default empty and which can be 
    used for execution of your tasks. These targets are usually executed 
    before and after some main targets. They are: 

      -pre-init:                 called before initialization of project properties
      -post-init:                called after initialization of project properties
      -pre-compile:              called before javac compilation
      -post-compile:             called after javac compilation
      -pre-compile-single:       called before javac compilation of single file
      -post-compile-single:      called after javac compilation of single file
      -pre-compile-test:         called before javac compilation of JUnit tests
      -post-compile-test:        called after javac compilation of JUnit tests
      -pre-compile-test-single:  called before javac compilation of single JUnit test
      -post-compile-test-single: called after javac compilation of single JUunit test
      -pre-jar:                  called before JAR building
      -post-jar:                 called after JAR building
      -post-clean:               called after cleaning build products

    (Targets beginning with '-' are not intended to be called on their own.)

    Example of inserting an obfuscator after compilation could look like this:

        <target name="-post-compile">
            <obfuscate>
                <fileset dir="${build.classes.dir}"/>
            </obfuscate>
        </target>

    For list of available properties check the imported 
    nbproject/build-impl.xml file. 


    Another way to customize the build is by overriding existing main targets.
    The targets of interest are: 

      -init-macrodef-javac:     defines macro for javac compilation
      -init-macrodef-junit:     defines macro for junit execution
      -init-macrodef-debug:     defines macro for class debugging
      -init-macrodef-java:      defines macro for class execution
      -do-jar-with-manifest:    JAR building (if you are using a manifest)
      -do-jar-without-manifest: JAR building (if you are not using a manifest)
      run:                      execution of project 
      -javadoc-build:           Javadoc generation
      test-report:              JUnit report generation

    An example of overriding the target for project execution could look like this:

        <target name="run" depends="jcobyla-impl.jar">
            <exec dir="bin" executable="launcher.exe">
                <arg file="${dist.jar}"/>
            </exec>
        </target>

    Notice that the overridden target depends on the jar target and not only on 
    the compile target as the regular run target does. Again, for a list of available 
    properties which you can use, check the target you are overriding in the
    nbproject/build-impl.xml file. 

    -->
</project>

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License

This article, along with any associated source code and files, is licensed under The MIT License

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About the Author

Anders Gustafsson, Cureos
CEO Cureos AB
Sweden Sweden
I am the owner of Cureos AB, a software development and consulting company located in Uppsala, Sweden. The company's main focus is in developing software for dose-response analysis and optimization of large patient treatment materials, primarily using the .NET framework. In my Ph.D. thesis I outlined a general optimization framework for radiation therapy, and I have developed numerous tools for radiotherapy optimization and dose-response modeling that have been integrated into different treatment planning systems.

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