Possible checks
*Make sure that all those referenced .js files are present in the scripts folder
*once the page is rendered, right click on the page and click view source, there you can find the links for the js file, click any one of the js file and see whether it actually navigates to the source. from this you will get some idea of the path. based on this you can modify the hardcoded js path.
*Try to remove the [../../] and run.
this depends on the directory structure of your solution, if the Scripts folder is present in root directory then you can write like this
<script src="Scripts/jquery-2.1.0.min.js"></script>
Let me know if you still face the issue.
Thanks