Make sure your company table has an ID in it, so
ID | Name | Password
1 | John | password
2 | Dave | 12345
You need to get the ID for the customer that is logged in, how you get that depends on your code. The easiest (but not the best) way is to store their ID in the Session when they login. You need to associate that company ID with any data relating to it, so your Employee table might be like
ID | CompanyID | Name
1 | 2 | Pete
2 | 1 | Ian
3 | 2 | Simon
This means that Pete and Simon work for company "Dave" and Ian works for "John". So when you want to list all employees your Employee_List stored proc needs to accept a @CompanyID parameter that your code will pass, and it will pass the ID of the currently logged in user.