ArrayQualitymetrics for microarray data is not running from the java code

try{
        Process p = Runtime.getRuntime().exec("C:/R/R-3.2.0/Rscript.exe arrayqualitymetrics.R");

        int processComplete = p.waitFor();

           if (processComplete == 0) {
                System.out.println("successfull");
                JOptionPane.showMessageDialog(null,"Process is completed");
           } else {
                System.out.println("Could not complete");
                JOptionPane.showMessageDialog(null,"You have selected wrong input file");
           }
        }
        catch (Exception e)
        {
            e.printStackTrace();
        }