If you want to specify a condition, you need to use else if:
if (MxStat == 1){
mxAdj = mxCost;
}
else if (MxStat != 1) {
var TotalCost = mxCost * 2;
mxAdj = (TotalCost * MxStat) - mxCost;
}
or simply:
if (MxStat == 1){
mxAdj = mxCost;
}
else {
var TotalCost = mxCost * 2;
mxAdj = (TotalCost * MxStat) - mxCost;
}