have a look at following Query
SELECT MIN(id) AS [ID]
INTO #dupCheck
FROM snapshot WHERE status='P' GROUP BY Code, Filename
SELECT ss.[ID],
ss.[Code],
ss.[center],
dupCheck.[ID],
hdr.ObjectKey,
hdr.[Status],
map.ID
FROM snapshot ss
LEFT OUTER JOIN header hdr ON hdr.Code = ss.center
LEFT OUTER JOIN Mapping map ON ss.Code = map.Code
LEFT OUTER JOIN #dupCheck dc ON dc.[ID] = ss.ID
WHERE ss.status='P'