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Exactly that problem!
Just drag'n'drop the MP4 onto Avidemux, and it'll build a .IDX2 file automatically if there is no index available. Make sure the video and audio streams are set to Copy, and the output is MP4 (so it won't re-encode the video and lose quality) and CTRL+S to save it as a new file (just in case, but I've had no problems).
Works beautifully for me!
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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Does this IDX2 file now need to forever live alongside the MP4, or is it just some temp file that gets created while the new MP4 gets built?
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Just a temporary file, you can delete it when you delete the original MP4.
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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If no such file was created...is that a sign the original was already properly indexed? (and, presumably, the stuttering is something unrelated...)
The output file actually came out slightly smaller - by roughly 3MB.
I suppose the real test will be to determine whether the stuttering is gone...and I don't have the 2+ hours for it right now.
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Probably - but if it's shorter then it's worth checking if the problem is gone. If you remember where it started stuttering, you could fast forward to the point on the original and new and see if they are different?
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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Yeah, that's the problem...I didn't write any of these time references down. It happened at many "random" point (minutes apart), but playing the file back showed the problem still existed at the same locations every time, so it wasn't some temporary glitch with VLC.
I'm probably gonna have to sit through the original again until at least the first instance occurs, and then jump right to that location in the reprocessed file. But when it comes to these sorts of things, I don't take anything for granted...
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It's a programmer/developers life griff 
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Small boat disturbs water, nonetheless (6)
OK, as it's getting close to full time, try this alternative clue for the same answer...
Pull in the water, symbolically, regardless (6)
modified 18-Feb-19 7:43am.
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Are you sure it's six letters ?
We can’t stop here, this is bat country - Hunter S Thompson RIP
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DerekTP123 wrote: Small boat disturbs water, nonetheless (6)
Scroti. As in a collection of Scrotums.
Michael Martin
Australia
"I controlled my laughter and simple said "No,I am very busy,so I can't write any code for you". The moment they heard this all the smiling face turned into a sad looking face and one of them farted. So I had to leave the place as soon as possible."
- Mr.Prakash One Fine Saturday. 24/04/2004
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Collecting heads may be horrific, but justified when the heads are sufficiently hollow. However, I have no desire to see your collection.
I have lived with several Zen masters - all of them were cats.
His last invention was an evil Lasagna. It didn't kill anyone, and it actually tasted pretty good.
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Only in Oz are Scroti large enough to sail in.
And that's only because a spider bit them while trying to kill you ... 
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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Wrong answer - a load of bollocks in fact... And it's scrota, not scroti. And now a search for "scrota" is in my internet search history as I do like to double-check. 
modified 18-Feb-19 6:47am.
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DerekTP123 wrote: Wrong answer - a load of bollocks in fact... And it's scrota, not scroti.
You weird Northern Hemisphere bastards.
DerekTP123 wrote: And now a search for "scrota" is in my internet search history as I do like to double-check.
Shoulda trusted me.
Michael Martin
Australia
"I controlled my laughter and simple said "No,I am very busy,so I can't write any code for you". The moment they heard this all the smiling face turned into a sad looking face and one of them farted. So I had to leave the place as soon as possible."
- Mr.Prakash One Fine Saturday. 24/04/2004
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OK, we give up, you win!
What was the solution?
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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small boat = TUG
water = H2O, or HOH
T__UG
_HO__H
small boat disturbs water, nonetheless = THOUGH
... in my defence, I have seen people using element symbols before, and H2O is a pretty common term for water.
I'm up again tomorrow then?
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H2O is a term for water but I've not seen HOH ?
We can’t stop here, this is bat country - Hunter S Thompson RIP
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Well, HHO would probably be fine, and "disturbs" works as an anagram identified anyway so the order of HOH doesn't really matter...
very tough clue though nonetheless
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Never thought of TUG ... got the H2O but missed the boaty bit...
Yes, you are up tomorrow!
Sent from my Amstrad PC 1640
Never throw anything away, Griff
Bad command or file name. Bad, bad command! Sit! Stay! Staaaay...
AntiTwitter: @DalekDave is now a follower!
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This describes my eldest exactly 
Freedom is the freedom to say that two plus two make four. If that is granted, all else follows.
-- 6079 Smith W.
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I always preferred a (small) glass of ice water over the head, my daughter now uses the same method on her teenagers
Never underestimate the power of human stupidity -
RAH
I'm old. I know stuff - JSOP
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36. Problem printing session? (3)
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Jam ? Run ?
We can’t stop here, this is bat country - Hunter S Thompson RIP
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